McLean CA, Masters CL, Vladimirtsev VA, Prokhorova IA, Goldfarb LG, Asher DM, et al. Viliuisk encephalomyelitis–review of the spectrum of pathological changes. Neuropathol Appl Neurobiol. 1997;23:212–7.
Article
CAS
Google Scholar
Lipton HL. Human Vilyuisk encephalitis. Rev Med Virol. 2008;18:347–52.
Article
CAS
Google Scholar
L.G. Golfarb, Vladimirtsev V.A., Renwick N.M., Platonov F.A. Viliuisk encephalomyelitis. Novosibirsk: SO RAN; 2014.
Oleksyk TK, Goldfarb LG, Sivtseva T, Danilova AP, Osakovsky VL, Shrestha S, et al. Evaluating association and transmission of eight inflammatory genes with Viliuisk encephalomyelitis susceptibility. Eur J Immunogenet. 2004;31:121–8.
Article
CAS
Google Scholar
Goldfarb LG, Gajdusek DC. Viliuisk encephalomyelitis in the Iakut people of Siberia. Brain. 1992;115(Pt 4):961–78.
Article
Google Scholar
Sivtseva TM, Vladimirtsev VA, Nikitina RS, Davidova TK, Popov DA, Osakovsky VL. Intrathecal synthesis of oligoclonal IgG in patients with Viliuisk encephalomyelitis: the relationship between oligoclonal bands and clinical features. J Neurol Sci. 2018;384:84–8.
Article
Google Scholar
Lee HS, Zhdanova SN, Vladimirtsev VA, Platonov FA, Osakovskiy VL, Subbotina EL, et al. Epidemiology of Viliuisk encephalomyelitis in Eastern Siberia. Epidemiology. 2010;21:24–30.
Article
Google Scholar
Petrov VA, Saltykova IV, Zhukova IA, Alifirova VM, Zhukova NG, Dorofeeva YB, et al. Analysis of gut microbiota in patients with Parkinson’s disease [Internet]. Bull Exp Biol Med. 2017. https://doi.org/10.1007/s10517-017-3700-7.
Article
PubMed
Google Scholar
Cekanaviciute E, Yoo BB, Runia TF, Debelius JW, Singh S, Nelson CA, et al. Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models [Internet]. Proc Natl Acad Sci. 2017. https://doi.org/10.1073/pnas.1711235114
Chen J, Chia N, Kalari KR, Yao JZ, Novotna M, Mateo Paz Soldan M, et al. Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls [Internet]. Scientific Reports. 2016. https://doi.org/10.1038/srep28484
Vuong HE, Hsiao EY. Emerging roles for the gut microbiome in autism spectrum disorder [Internet]. Biol Psychiatry. 2017. https://doi.org/10.1016/j.biopsych.2016.08.024
Pistollato F, Sumalla Cano S, Elio I, Masias Vergara M, Giampieri F, Battino M. Role of gut microbiota and nutrients in amyloid formation and pathogenesis of Alzheimer disease. Nutr Rev. 2016;74:624–34.
Article
Google Scholar
Tremlett H, Bauer KC, Appel-Cresswell S, Finlay BB, Waubant E. The gut microbiome in human neurological disease: a review [Internet]. Annal Neurol. 2017. https://doi.org/10.1002/ana.24901
Hsiao EY, McBride SW, Hsien S, Sharon G, Hyde ER, McCue T, et al. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell. 2013;155:1451–63.
Article
CAS
Google Scholar
Luna RA, Foster JA. Gut brain axis: diet microbiota interactions and implications for modulation of anxiety and depression [Internet]. Curr Opin Biotechnol. 2015. https://doi.org/10.1016/j.copbio.2014.10.007
Fitzgerald E, Murphy S, Martinson HA. Alpha-synuclein pathology and the role of the microbiota in Parkinson’s disease [Internet]. Front Neurosci. 2019. https://doi.org/10.3389/fnins.2019.00369
Dominy SS, Lynch C, Ermini F, Benedyk M, Marczyk A, Konradi A, et al. Porphyromonas gingivalis in Alzheimer’s disease brains: evidence for disease causation and treatment with small-molecule inhibitors [Internet]. Sci Adv. 2019. https://doi.org/10.1126/sciadv.aau3333
Schnorr SL, Candela M, Rampelli S, Centanni M, Consolandi C, Basaglia G, et al. Gut microbiome of the Hadza hunter-gatherers. Nat Commun. 2014;5:3654.
Article
CAS
Google Scholar
Dubois G, Girard C, Lapointe F-J, Shapiro BJ. The Inuit gut microbiome is dynamic over time and shaped by traditional foods. Microbiome. 2017;5:151.
Article
Google Scholar
Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, et al. Gut microbiome diversity among cheyenne and Arapaho individuals from Western Oklahoma. Curr Biol. 2015;25:3161–9.
Article
CAS
Google Scholar
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A. 2010;107:14691–6.
Article
Google Scholar
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, et al. Human gut microbiome viewed across age and geography. Nature. 2012;486:222–7.
Article
CAS
Google Scholar
Ley RE. Gut microbiota in 2015: Prevotella in the gut: choose carefully. Nat Rev Gastroenterol Hepatol. 2016;13:69–70.
Article
CAS
Google Scholar
Willows N, Veugelers P, Raine K, Kuhle S. Associations between household food insecurity and health outcomes in the Aboriginal population (excluding reserves). Health Rep. 2011;22:15–20.
PubMed
Google Scholar
Zlojutro M, Tarskaia LA, Sorensen M, Josh Snodgrass J, Leonard WR, Crawford MH. The origins of the Yakut people: Evidence from mitochondrial DNA diversity [Internet]. Int J Hum Genet. 2008. https://doi.org/10.1080/09723757.2008.11886024
Fedorova SA, Reidla M, Metspalu E, Metspalu M, Rootsi S, Tambets K, et al. Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia. BMC Evol Biol. 2013;19:127.
Article
Google Scholar
Stepanov V, Stepanov V, Vagajceva K, Vagajceva K, Bocharova A, Bocharova A, et al. Development of multiplex genotyping method of polymorphic markers for genes involved in human adaptation to cold climate [Internet]. Science Evol. 2016.https://doi.org/10.21603/2500-1418-2016-1-2-92-101
Uinuk-Ool TS, Takezaki N, Klein J. Ancestry and kinships of native Siberian populations: the HLA evidence [Internet]. Evol Anthropol Issues News Rev. 2003. /https://doi.org/10.1002/evan.10124
Hsieh P, Hallmark B, Watkins J, Karafet TM, Osipova LP, Gutenkunst RN, et al. Exome sequencing provides evidence of polygenic adaptation to a fat-rich animal diet in indigenous Siberian populations. Mol Biol Evol. 2017;34:2913–26.
Article
CAS
Google Scholar
Lebedeva L, Feiguine G. The pension systems in the group of Seven Countries: the current state, prospects of development, and references for Russia [Internet]. Mediter J Soc Sci. 2015. https://doi.org/10.5901/mjss.2015.v6n4s4p388
Girard C, Tromas N, Amyot M, Jesse Shapiro B. Gut microbiome of the Canadian arctic inuit [Internet]. mSphere. 2017. https://doi.org/10.1128/msphere.00297-16
Tyakht AV, Kostryukova ES, Popenko AS, Belenikin MS, Pavlenko AV, Larin AK, et al. Human gut microbiota community structures in urban and rural populations in Russia [Internet]. Nature Commun. 2013. https://doi.org/10.1038/ncomms3469
Efimova D, Tyakht A, Popenko A, Vasilyev A, Altukhov I, Dovidchenko N, et al. Knomics-Biota: a system for exploratory analysis of human gut microbiota data [Internet]. BioData Mining. 2018. https://doi.org/10.1186/s13040-018-0187-3
Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, et al. Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems [Internet]. 2017;2. https://doi.org/10.1128/mSystems.00191-16
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72:5069–72.
Article
CAS
Google Scholar
Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, et al. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome. 2018;6:90.
Article
Google Scholar
Klimenko N, Tyakht A, Popenko A, Vasiliev A, Altukhov I, Ischenko D, et al. Microbiome responses to an uncontrolled short-term diet intervention in the frame of the citizen science project [Internet]. Nutrients. 2018. https://doi.org/10.3390/nu10050576.
Article
PubMed
PubMed Central
Google Scholar
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–6.
Article
CAS
Google Scholar
Rivera-Pinto J, Egozcue JJ, Pawlowsky-Glahn V, Paredes R, Noguera-Julian M, Calle ML. Balances: a New Perspective for Microbiome Analysis. mSystems [Internet]. American Society for Microbiology Journals; 2018 [cited 2020 Mar 31];3. Available from: https://msystems.asm.org/content/3/4/e00053-18.abstract
Shaw KA, Bertha M, Hofmekler T, Chopra P, Vatanen T, Srivatsa A, et al. Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease. Genome Med. 2016;8:75.
Article
Google Scholar
Tyakht AV, Alexeev DG, Popenko AS, Kostryukova ES, Govorun VM. Rural and urban microbiota: To be or not to be? Gut Microbes. 2014;5:351–6.
Article
Google Scholar
O’ Donnell MM, Harris HMB, Lynch DB, Ross RP, O’Toole PW, . Lactobacillus ruminis strains cluster according to their mammalian gut source. BMC Microbiol. 2015;15:80.
Article
Google Scholar
Mancabelli L, Milani C, Lugli GA, Turroni F, Cocconi D, van Sinderen D, et al. Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis. FEMS Microbiol Ecol [Internet]. 2017. https://doi.org/10.1093/femsec/fix153.
Article
Google Scholar
Angelakis E, Bachar D, Yasir M, Musso D, Djossou F, Gaborit B, et al. Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals [Internet]. New Microbes New Inf. 2019. https://doi.org/10.1016/j.nmni.2018.10.009.
Article
Google Scholar
Edouard S, Sankar S, Dangui NPM, Lagier J-C, Michelle C, Raoult D, et al. Genome sequence and description of Nesterenkonia massiliensis sp. nov. strain NP1T [Internet]. Standards Genomic Sci. 2014. https://doi.org/10.4056/sigs.5631022.
Article
Google Scholar
Seck EH, Fournier P-E, Raoult D, Khelaifia S. “Halomonas massiliensis” sp. Nov., a new halotolerant bacterium isolated from the human gut. New Microbes New Infect. 2016;14:19–20.
Article
CAS
Google Scholar
Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, et al. Richness of human gut microbiome correlates with metabolic markers. Nature. 2013;500:541–6.
Article
Google Scholar
Upadhyaya B, McCormack L, Fardin-Kia AR, Juenemann R, Nichenametla S, Clapper J, et al. Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions. Sci Rep. 2016;6:28797.
Article
CAS
Google Scholar
Borgo F, Riva A, Benetti A, Casiraghi MC, Bertelli S, Garbossa S, et al. Microbiota in anorexia nervosa: the triangle between bacterial species, metabolites and psychological tests. PLoS ONE. 2017;12:e0179739.
Article
Google Scholar
Goodrich JK, Davenport ER, Beaumont M, Jackson MA, Knight R, Ober C, et al. Genetic determinants of the gut microbiome in UK twins. Cell Host Microbe. 2016;19:731–43.
Article
CAS
Google Scholar
Volokh O, Klimenko N, Berezhnaya Y, Tyakht A, Nesterova P, Popenko A, et al. Human gut microbiome response induced by fermented dairy product intake in healthy volunteers. Nutrients [Internet]. 2019. https://doi.org/10.3390/nu11030547.
Article
Google Scholar
Ruaud A, Esquivel-Elizondo S, de la Cuesta-Zuluaga J, Waters JL, Angenent LT, Youngblut ND, et al. Syntrophy via interspecies H2 transfer between christensenella and methanobrevibacter underlies their global cooccurrence in the human gut [Internet]. mBio. 2020. https://doi.org/10.1128/mbio.03235-19.
Article
PubMed
PubMed Central
Google Scholar
De Bellis G, Zecca L, Cereda E, Consolandi C, Pezzoli G, Barichella M, et al. Unraveling gut microbiota in Parkinson’s disease and atypical parkinsonism. Mov Disord. 2019;34:396–405.
Article
Google Scholar
Hill-Burns EM, Debelius JW, Morton JT, Wissemann WT, Lewis MR, Wallen ZD, et al. Parkinson’s disease and Parkinson’s disease medications have distinct signatures of the gut microbiome. Mov Disord. 2017;32:739–49.
Article
CAS
Google Scholar
Sanguinetti E, Collado MC, Marrachelli VG, Monleon D, Selma-Royo M, Pardo-Tendero MM, et al. Microbiome-metabolome signatures in mice genetically prone to develop dementia, fed a normal or fatty diet. Sci Rep. 2018;8:4907.
Article
Google Scholar
Goodrich JK, Waters JL, Poole AC, Sutter JL, Koren O, Blekhman R, et al. Human genetics shape the gut microbiome. Cell. 2014;159:789–99.
Article
CAS
Google Scholar
Kurina I, Popenko A, Klimenko N, Koshechkin S, Chuprikova L, Filipenko M, et al. Development of qPCR platform with probes for quantifying prevalent and biomedically relevant human gut microbial taxa. Mol Cell Probes. 2020;2020:101570.
Article
Google Scholar