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STUB1/CHIP mutations cause Gordon Holmes syndrome as part of a widespread multisystemic neurodegeneration: evidence from four novel mutations
Orphanet Journal of Rare Diseases volume 12, Article number: 31 (2017)
CHIP, the protein encoded by STUB1, is a central component of cellular protein homeostasis and interacts with several key proteins involved in the pathogenesis of manifold neurodegenerative diseases. This gives rise to the hypothesis that mutations in STUB1 might cause a far more multisystemic neurodegenerative phenotype than the previously reported cerebellar ataxia syndrome.
Whole exome sequencing data-sets from n = 87 index subjects of two ataxia cohorts were screened for individuals with STUB1 mutations. In-depth phenotyping by clinical evaluation and neuroimaging was performed in mutation carriers.
We identified four novel STUB1 mutations in three affected subjects from two index families (frequency 2/87 = 2.3%). All three subjects presented with a severe multisystemic phenotype including severe dementia, spastic tetraparesis, epilepsy, and autonomic dysfunction in addition to cerebellar ataxia, plus hypogonadism in one index patient. Diffusion tensor imaging revealed degeneration of manifold supra- and infratentorial tracts.
Our findings provide clinical and imaging support for the notion that CHIP is a crucial converging point of manifold neurodegenerative processes, corresponding with its universal biological function in neurodegeneration. Further, our data reveal the second STUB1 family with ataxia plus hypogonadism reported so far, demonstrating that Gordon Holmes syndrome is indeed a recurrent manifestation of STUB1. However, it does not present in isolation, but as part of a broad multisystemic neurodegenerative process. This supports the notion that STUB1 disease should be conceptualized not by historical or clinical syndromic names, but as a variable multisystemic disease defined by disturbed function of the underlying STUB1 gene, which translates into a multidimensional gradual spectrum of variably associated clinical signs and symptoms.
Mutations in STUB1, the gene encoding the protein CHIP (C-terminus of HSC70-interacting Protein), were recently identified as a cause of autosomal recessive cerebellar ataxia (ARCA) in several families [1–5]. Most of the reported individuals with STUB1 mutations had a relatively circumscribed phenotype, mainly consisting of an ataxia syndrome with involvement of only one or two additional neurologic systems. For example, in one index patient hypogonadotropic hypogonadism was identified concomitant to ataxia, leading to the notion that STUB1 is a cause of Gordon Holmes syndrome [5, 6]. Yet it remains unclear whether hypogonadism is a systematic part of the phenotypic spectrum of STUB1 and not just a coincidental finding in a single family .
The current notion of STUB1 as causing a relatively circumscribed ‘ataxia plus phenotype’ is remarkable, since CHIP, the protein encoded by STUB1, is a key component of general cellular protein homeostasis [7, 8] and interacts with several proteins involved in the pathogenesis of various neurodegenerative diseases and system degenerations, including Tau, α-Synuclein, Parkin2, LRRK2, Ataxin1, Ataxin3, and ATCAY (for references and overview, see Figure Additional file 1). Accordingly, it is to be expected that in patients with STUB1 mutations, disruption of CHIP function might lead to far more extensive neurodegeneration than the previously reported cerebellar ataxia syndrome. Specifically, given the central role of CHIP in protein homeostasis and its interactions with many neurodegenerative proteins, we hypothesized that mutant STUB1 should lead to damage of almost all brain systems.
Here we report the clinical, genetic and imaging findings from three novel STUB1 patients and four novel STUB1 mutations. We demonstrate that mutant STUB1 leads to severe multisystemic neurodegeneration affecting almost all brain tracts and, correspondingly, presenting with a broad multisystemic phenotype including severe dementia, spastic tetraparesis, epilepsy, and autonomic dysfunction in addition to cerebellar ataxia. These clinical and imaging findings correspond with the broad protein interactome of CHIP with other neurodegenerative disease proteins. Moreover, our data provide the first confirmation from an independent family showing that hypogonadotropic hypogonadism is indeed a recurrent part of the phenotypic spectrum of STUB1 mutations, rendering them an important cause of Gordon Holmes syndrome; yet not in isolation, but as part of a broad multisystemic neurodegenerative process. This indicates that STUB1 disease should not be conceptualized by distinct syndromic names, but as a variable multisystemic disease defined by disturbed function of the underlying STUB1 gene, which translates into a multidimensional gradual spectrum of variably associated signs and symptoms.
Whole exome sequencing (WES) data-sets from n = 87 index subjects of two ataxia cohorts (n = 35 from Tuebingen, Germany; exomes generated from 2014 and 2015; and n = 52 from Antwerp, Belgium exomes generated from 2012 until 2015) were screened for individuals with biallelic STUB1 mutations. Cohorts comprised subjects with early-onset degenerative ataxia compatible with autosomal inheritance (i.e. progressive ataxia with onset <40 years with ataxia in no more than one generation), negative for trinucleotide repeat expansions causing Friedreich’s ataxia and spinocerebellar ataxia type 1, 2, 3, 6, 7, and 17. WES was performed using the SureSelect Human All Exon 50 Mb kit (Agilent, Santa Clara, CA, USA) for in-solution enrichment and the Hiseq2000 instrument (Illumina, San Diego, CA, USA) as described before . All data were then annotated and imported into the GENESIS (gem.app) platform, a web-based tool for next generation sequencing data analysis (http://thegenesisprojectfoundation.org/) [10, 11]. Variants were filtered for (i) non-synonymous homozygous or compound heterozygous mutations in STUB1 that were (ii) absent or extremely rare (minor allele frequency <0.5%) in the public databases dbSNP137, NHLBI ESP6500, 1000Genomes project, and ExAc (60706 exomes; Exome Aggregation Consortium; Cambridge, MA http://exac.broadinstitute.org) as well as in GENESIS (<11 heterozygous or homozygous alleles in 5996 subjects in the GENESIS database), and showed an at least (iii) moderate conservation (PhastCons score [100 vertebrate genomes] >0.5 AND phyloP [100 vertebrate genomes] >1.5) and (iv) moderate genotype quality (quality filter [QUAL] >35 and genotype quality GQ > 50).
The data collection was approved by the Ethics Committees of the University Hospital Antwerp and the University Hospital Tuebingen (598/2011BO1).
All STUB1 subjects were examined by an experienced neurologist (Tuebingen patients: M.S.; Antwerp patients: J.B.) according to a standardized clinical assessment protocol covering all neurological systems, including scales to capture cognition, spasticity, ataxia, and overall handicap (Spinocerebellar degeneration functional score [SDFS]). This SDFS evaluates the disability stage from 0 to 7 (0: no functional handicap; 1: no functional handicap but signs at examination; 2: mild, able to run, walking unlimited; 3: moderate, unable to run, limited walking without help; 4: severe, walking with one stick; 5: walking with two sticks; 6: unable to walk, requiring wheelchair; 7: confined to the bed) .
Magnetic resonance imaging (MRI)
In addition to clinical routine cerebral imaging, performed in all STUB1 subjects, detailed diffusion tensor imaging (DTI) was performed on a 3 Tesla scanner (Skyra, Siemens Healthcare, Erlangen, Germany) with a 32 channel head coil in one STUB1 subject. DTI data was acquired with 64 diffusion directions (b = 1000 s/mm2) and one b0 image with an isotropic resolution of 2 mm and coverage of the whole head. The patient and nine age and gender matched healthy controls (mean age 32.9 years, range 27–38 years) were examined at the same scanner with the same DTI protocol. Data were processed with Tract-Based Spatial Statistics (TBSS) . TBSS projects all subjects’ fractional anisotropy (FA) data onto a mean FA tract skeleton which represents the centres of all tracts common to the group. Usually, such maps are analysed voxel-wise for significant differences between groups. However, given the group size of n = 1 for the patient, a voxel-wise comparison would lead to many misleading false positive and false negative results. Therefore, we here compared the FA of whole tracts defined by the 48 labelled white matter tracts of the ICBM-DTI-81 atlas  provided in FSL (FMRIB Sofware Library, available at http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/) between the patient and the control group. All labels that covered at least 600 voxels of the skeleton were evaluated with a t-test for significant between-group differences between the healthy control group and the STUB1 patient. To correct for multiple comparison the Bonferroni method was used and the significance level was set at α < 0.0011.
For methods of the western blot analysis, see Additional file 2. For methods of the CHIP protein-protein-network analysis, see Additional file 1.
WES revealed four STUB1 mutations (one nonsense, three missense), all of them not previously linked to human disease, in subjects from two different index families (2/87 = 2.3% frequency in total cohort) from Central Europe (family 1: German origin; family 2 Belgian origin). Subject II.1 of family 1 carried the variant c.355C > T in Exon 2, which is predicted to result in a stop codon at position 119 (p.Arg119*), most probably leading to nonsense-mediated mRNA decay due to the premature stop codon. The second variant, c.880A > T in Exon 7, leads to an amino acid exchange from isoleucine to phenylalanine at position 294 (p.Ile294Phe) (Fig. 1a), affecting the highly conserved U-Box domain of the protein (Fig. 1b). Subjects II.1 and II.4 of family two carried the STUB1 missense variants, c.433A > C in Exon 3, p.Lys145Gln, located outside the tetratricopeptide repeat sequence and the U-Box domain (Fig. 1b); and c.728C > T in Exon 6, p.Pro243Leu (Fig. 1a) which affects the U-Box domain of the protein. All four variants were absent or very rare in in the Exome Variant Server (EVS) and in-house databases (Table 1).
All three missense mutations were predicted to be damaging by at least three different in silico prediction tools (Table 1). All mutations were confirmed by Sanger sequencing. Biallelic localization of the respective STUB1 variants in trans was confirmed in both families by testing for a heterozygous state of the respective variant in the parents. In line with the fact that affected patients of both STUB1 families carried at least one missense STUB1 variant (rather than two truncating variants), no truncation of the CHIP protein was observed (Additional file 2).
A summarized overview of clinical symptoms in all three affected subjects is provided in Table 2 (for detailed case vignettes, see Additional file 3). Subject II.1, family 1, presented with slightly delayed early motor development, generalized tonic-clonic seizures (years 1–2 of life) and undescended testes (surgery at age 7). He did not show ataxia symptoms until age 12. Also subject II. 4 of family 2 did not present with ataxia as initial symptom, but with cataracts requiring surgery at the age of 11. Ataxia did not start before age 20. Only in subject II.1, STUB1 disease started with ataxia as initial symptom (age 12 years), followed by spasticity starting at the age of 20 and cognitive deficits starting at 23 years. All three subjects developed severe dementia with predominantly frontal-executive dysfunction and progressive loss of language in the first three decades of life, leading to mutism in 2/3 cases before the age of 40. Likewise, all three subjects developed severe pyramidal tract damage to arms and legs, including incapacitating tetraspasticity. Extrapyramidal hyperkinetic movement disorders included choreo-athetotic movements in 2/3 subjects and dystonia in 1/3 subjects. Gait disturbances were quickly progressive in all three subjects, leading to wheelchair-dependency 6, 9, and 15 years after respective onset of gait difficulties. All three subjects developed severe dysphagia, starting between age 20 to age 35, and necessitating gastric tube feeding in both subjects from family 2 at the age of 36 and 43, respectively. This severe multisystemic neurodegenerative disease led to complete care dependency in all three subjects before aged 40, and premature death at the age of 40 in one of them.
Routine imaging (cerebral magnetic resonance imaging [cMRI] in two subjects, cerebral computer tomography [cCT] in one subject) showed cerebellar atrophy in all three subjects and, in addition, mesencephalic and parieto-occipital cortical atrophy in subject II.1, family 1. To reveal the atrophy pattern of different neural tracts in more detail, diffusion tension imaging (DTI) imaging was performed in subject II.1. It showed a widespread atrophy and globally reduced fractional anisotropy (FA) of literally all brain fiber tracts, from the corticospinal tract via the corona radiata to the superior, middle and inferior cerebellar peduncle (Fig. 2).
Our findings on four novel mutations in three novel STUB1 subjects extend the genetic spectrum of STUB1, corroborating earlier findings that STUB1 mutations both inside and outside of the tetratricopeptide repeat and U-Box domain of CHIP can lead to neurodegenerative disease . The approximate frequency estimate of 2.3% confirms our previous data from an independent early-onset ataxia cohort that STUB1 is a recurrent, but overall rare cause of early-onset ataxia (previous frequency estimate: 1.8%; ).
More importantly, however, our findings provide evidence for a severe multisystemic neurodegenerative disease, corresponding with the universal protein function of CHIP in neurodegeneration (see Figs. 2, 3, and Figure Additional file 1). Specifically, in line with the universal biological role of CHIP as a crucial converging point of multiple pathways important for neuronal homeostasis (Additional file 1), the disease phenotype is not limited to an ataxia syndrome with minor involvement of one or two additional systems, but rather involves almost all brain tracts (Figs. 3 and 2). This is evidenced clinically by the fact that ataxia is only one feature of a broad multisystemic phenotype which includes severe dementia advancing to mutism, epilepsy, profound pyramidal tract damage including tetraspasticity, and extrapyramidal hyperkinetic movement disorders. In fact, ataxia was not even the first feature in the evolution of the disease in two out of the three affected subjects.
The notion of aberrant CHIP function leading not only to ataxia syndromes, but to a broad neurodegeneration, is further evidenced by DTI imaging. In line with the clinical findings, DTI demonstrates neurodegeneration of almost all brain fiber tracts, from the corticospinal tract via the corona radiata to the cerebellar peduncles. Taken together, our findings of widespread neurodegeneration affecting manifold brain systems provide clinical and imaging evidence that CHIP seems to be an important protein for cell survival in various neuronal cell types.
Finally, our data provide the first confirmation from an independent family showing that hypogonadotropic hypogonadism is indeed part of the phenotypic cluster of STUB1 mutations. So far, only one STUB1 family has been reported to include also hypogonadism as part of the clinical phenotype . Our description of a second, independent case from a different ethnic background now confirms hypogonadism as part of the disease spectrum. It adds further support of STUB1 as one important cause of Gordon Holmes syndrome , which shows a substantial genetic heterogeneity as it can also be caused by mutations in e.g. PNPLA6 . Importantly, we demonstrate here that STUB1 causes the Gordon Holmes syndrome (early onset ataxia plus hypogonadism) not in isolation, but rather as part of a broad multisystemic neurodegenerative process (see Fig. 3). It thus resembles also other genes which cause Gordon Holmes syndrome as part of a multisystemic disease spectrum, e.g. PNPLA6 .
Correspondingly, in line with the reclassifications of other neurodegenerative diseases [15, 16], we suggest viewing STUB1-associated disease not in terms of syndromic names (e.g. “ataxia-dementia-hypogonadotropism syndrome” or “Gordon Holmes syndrome”); rather, it should be conceptualized as a fluid, complex, multisystemic neurodegenerative disease affecting various regions and/or systems of the nervous system (cerebellar, extrapyramidal, pyramidal, cortical, endocrine) defined by disturbed STUB1 function that translates phenotypically into a multidimensional gradual spectrum of variably associated signs and symptoms (Fig. 3).
Our findings provide clinical and imaging support for the notion that CHIP is a crucial converging point of widespread multisystemic neurodegenerative processes, thus corresponding with its universal biological function in neuronal homeostasis. Further, we show that Gordon Holmes syndrome presents as part of this widespread, variable multisystemic neurodegenerative process.
Autosomal recessive cerebellar ataxia
Ataxia, cerebellar, Cayman type
Brainstem auditory evoked potentials
C-terminus of HSC70-interacting Protein
Diffusion tensor imaging
Exome Variant Server
Exome Aggregation Consortium
Generalized tonic-clonic seizure
Genome variant server
Minor allele frequency
Mini Mental State Examination
Magnetic resonance imaging
Scale for the Assessment and Rating of Ataxia
Spinocerebellar Degeneration Functional Score
Spastic Paraplegia Rating Scale
Somatosensory evoked potential
STIP1 homology and U-box containing protein 1
Tract-based spatial statistics
Total intelligence quotient
Wechsler Adult Intelligence Scale
Whole exome sequencing
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The authors would like to thank the NHLBI GO Exome Sequencing Project and its ongoing studies which produced and provided exome variant calls for comparison.
M.S. was supported by the Else Kröner-Fresenius-Stiftung. This work was furthermore supported from the European Union’s Horizon 2020 research and innovation program under the ERA-NET Cofund action N° 643578. It was supported by the BMBF (01GM1607 to M.S.), under the frame of the E-Rare-3 network PREPARE. Moreover, it received support from the Association Belge contre les Maladies Neuromusculaire (ABMM) and the EU FP7/2007-2013 under grant agreement number 2012-305121 (NEUROMICS). J.B. is supported by a Senior Clinical Researcher mandate of the Research Fund - Flanders (FWO). Publication of this article was supported by the Deutsche Forschungsgemeinschaft and Open Access Publishing Fund of University of Tübingen.
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SNH: acquisition of data, preparation of figures, drafting and revision of the manuscript; TD acquisition of data, revision of the manuscript; BB: acquisition of data, preparation of figures, revision of the manuscript; KS: acquisition of data, revision of the manuscript; SZ: acquisition of data, revision of the manuscript; SR: acquisition of data, preparation of figures, revision of the manuscript; LS: revision of the manuscript; RS: acquisition of data, revision of the manuscript; PDJ: acquisition of data, revision of the manuscript; JB: acquisition of data, revision of the manuscript; MS: acquisition of data, conceptualization of the study, revision and finalization of the manuscript. All authors read and approved the final manuscript.
S.N.H., T.D., B.B., K.S., S.Z., S.R., L.S., R.S., P.D.J., and J.B. have nothing to disclose. M.S. received speaker’s honoraria and research support from Actelion Pharmaceuticals, unrelated to the current project and manuscript. B.B. received travel funding by Bayer Vital, unrelated to the current project and manuscript.
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Consent for publication was obtained from every patient/legal guardian.
Ethics approval and consent to participate
The data collection was approved by the Ethics Committees of the University Hospital Antwerp and the University Hospital Tuebingen (598/2011BO1). Written informed consent was obtained from every patient/legal guardian.
Additional file 1:
Protein network analysis. (DOCX 1176 kb)
Additional file 2:
Western blots of CHIP in mutation carriers. (DOCX 241 kb)
Additional file 3:
Case vignettes. Detailed medical history and clinical examination data of the three STUB1 patients. (DOCX 14 kb)
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Hayer, S.N., Deconinck, T., Bender, B. et al. STUB1/CHIP mutations cause Gordon Holmes syndrome as part of a widespread multisystemic neurodegeneration: evidence from four novel mutations. Orphanet J Rare Dis 12, 31 (2017). https://doi.org/10.1186/s13023-017-0580-x
- Neurodegenerative disease
- Gordon Holmes syndrome
- Recessive ataxia
- Spastic ataxia
- Early onset ataxia
- Early-onset dementia
- Magnetic resonance imaging