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Table 2 Summary of somatic mutations identified in pediatric patients with vascular malformation

From: Somatic mutation spectrum of a Chinese cohort of pediatrics with vascular malformations

Gene

Mutation

Oncogenic activity a

COSMIC b

gnomAD c

Present study d

Hotspot

PIK3CA (NM_006218)

c.328_330delGAA;p.E110del

Unknown

41

0

1

No

 

c.344G > C;p.R115P

Unknown

6

0

1

No

 

c.1049A > G;p.D350G

Unknown

10

0

1

No

 

c.1133G > A;p.C378Y

Unknown

5

0

1

No

 

c.1258 T > C;p.C420R

Strong

216

0

1

No

 

c.1357G > A;p.E453K

Intermediate

88

0

3

No

 

c.1624G > A;p.E542K

Strong

1887

0

7

Yes

 

c.1633G > A;p.E545K

Strong

3064

1

4

Yes

 

c.2176G > A;p.E726K

Unknown

160

0

1

No

 

c.2740G > A;p.G914R

Unknown

6

0

1

No

 

c.3073A > G;p.T1025A

Unknown

54

0

1

No

 

c.3139C > T;p.H1047Y

Intermediate

117

0

1

No

 

c.3140A > G;p.H1047R

Strong

3786

1

5

Yes

 

c.3140A > T;p.H1047L

Strong

565

1

1

Yes

AKT1 (NM_005163)

c.235C > A;p.Q79K

–

22

0

1

No

GNA11 (NM_002067)

c.547C > T;p.R183C

–

24

0

2

Yes

GNAQ (NM_002072)

c.547C > G;p.R183G

–

4

0

1

No

 

c.548G > A;p.R183Q

–

50

0

12

Yes

TEK (NM_000459)

c.2740C > T;p.L914F

–

0

0

5

Yes

MAP3K3 (NM_002401)

c.1161A > C;p.E387D

–

0

0

1

No

 

c.1323C > G;p.p.I441M

–

0

0

2

Yes

  1. aAccording to Dogruluk T’s study (ref. 32) for PIK3CA mutations; bNumber of cancer patients with somatic mutation in COSMIC v95 (released 24-NOV-2021); cNumber of alleles in gnomAD v2.2.1; dNumber of patients with somatic mutation in present study; COSMIC: Catalogue of Somatic Mutations in Cancer (https://cancer.sanger.ac.uk/cosmic/); gnomAD: Genome Aggregation Database (https://gnomad.broadinstitute.org)