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Table 4 Gene test results and pathogenicity ratings according to ACMG and Sherloc

From: Various vascular malformations are prevalent in Finnish pseudoxanthoma elasticum (PXE) patients: a national registry study

Patient

ABCC6 variant allele 1

ACMG

Sherloc

ABCC6 variant allele 2

ACMG

Sherloc

1

NA

  

NA

  

2

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

3

NA

  

NA

  

4

NA

  

NA

  

5

NA

  

NA

  

6

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

7

c.1171A > G, p.Arg391Gly

3

3 [16]

Deletion of exons 2–30

3

3

8

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

9

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

10

c.1132C > T p.Gln378Ter

3

5a

c.1898G > T p.Ser633Ile

3

4

11

c.3614_3615del, p.(Ser1205Cysfs*72)

4

5

c.1999del, p.(Ala667Glnfs*21)

4

5

12

c.3421C > T, p.Arg1141Ter

5

5

Partial deletion in exons 2–4

5b

3b

13

c.341C > G p.Thr114Arg

3

3c

Deletion of exon 21

5b

3b

14

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

15

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

16

deletion of exons 23–28 c.[2996-? 4041 + ?del]

4

5

deletion of exons 23–28 c.[2996-? 4041 + ?del]

4

5

17

NA

  

NA

  

18

NA

  

NA

  

19

NA

  

NA

  

20

NA

  

NA

  

21

c.3421C > T, p.Arg1141Ter

5

5

c.3421C > T, p.Arg1141Ter

5

5

  1. ACMG American College of Medical Genetics, NA not available
  2. aPseudogene amplification was excluded
  3. bTendency towards likely pathogenic if the deletion induces a reading frame shift
  4. cPseudogene amplification was not excluded