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Table 1. DEGs interactors of RFX6 in our analysis

From: Determining oncogenic patterns and cancer predisposition through the transcriptomic profile in Mitchell–Riley syndrome with heterotopic gastric mucosa and duodenal atresia: a case report

Gene symbol

Gene name

Control mean counts

MRS mean counts

Fold change

q-value

AGAP4

ArfGAP with GTPase domain, ankyrin repeat and PH domain 4

97.37

4969.96

5.67

6.96e−24

ATR

ATR serine/threonine kinase

1005.56

5420.26

2.43

4.94e−12

EHBP1

EH domain binding protein 1

316.07

2251.49

2.84

1.93e−20

EIF2AK3

Eukaryotic translation initiation factor 2 alpha kinase 3

761.30

4152.75

2.45

6.13e−14

GHRL

Ghrelin and obestatin prepropeptide

308.44

16.68

− 4.21

1.58e−02

GLIS3

GLIS family zinc finger 3

13.28

200.13

3.88

2.23e−04

GPR68

G protein-coupled receptor 68

806.28

0

− 8.04

6.51e−04

IER3IP1

Immediate early response 3 interacting protein 1

303.11

0

− 6.63

5.38e−03

IFT88

Intraflagellar transport 88

192.00

1250.83

2.70

4.18e−11

MAFB

MAF bZIP transcription factor B

1639.27

216.81

− 2.92

3.19e−03

PLAGL1

PLAG1 like zinc finger 1

963.13

166.78

− 2.53

1.11e−04

RFX7

Regulatory factor X7

794.65

3635.74

2.19

2.45e−07

RPGRIP1L

RPGRIP1 like

55.03

300.20

2.42

2.47e−04

SYTL4

Synaptotagmin like 4

24.76

200.13

3.01

6.69e−03

  1. We highlighted the transcripts mean counts obtained after DESeq2 normalization, the fold changes computed as log2 (MRS mean counts/control mean counts) and the q-value for each of the DEGs in our analysis that interacts with RFX6 in STRING. All values are rounded to the second decimal digit
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Orphanet Journal of Rare Diseases

ISSN: 1750-1172