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Table 4 Summary of variants with uncertain pathogenicity

From: Diverse spectrum of rare deafness genes underlies early-childhood hearing loss in Japanese patients: a cross-sectional, multi-center next-generation sequencing study

Gene

Nucleotide change

Amino acid change

NCBI ID

dbSNP135

Allele frequency in 1000GENOME

Allele frequency in ESP6500

Allele frequency in Japanese control

PolyPhen-2 prediction (score)

PROVEAN prediction (score)

Pathogenicity

Family

Reference

DFNA5

c.781C>T

p.R261X

NM_004403.2

None

-

0

0/192

-

-

Uncertain

2

 

USH2A

c.1346G>A

p.R449H

NM_206933.2

None

-

0

5/378

Benign (0.017)

Neutral (-0.880)

Uncertain

7

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