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Table 2 Clinical features of probands and genotypes of known deafness genes

From: Whole exome analysis of patients in Japan with hearing loss reveals high heterogeneity among responsible and novel candidate genes

Family ID

Gene symbol

Disease

Reference mRNA

Genotype-nucleotide change

Predicted inheritance mode of family

Sex

Hearing levels (left/right)

Audiogram (L/R)

1470

MYO15A

DFNB3

NM_016239.3

c.[419delA];[1185dupC]

Sporadic

F

Severe/severe†

Flat/gently sloping†

1540

MYO15A

DFNB3

NM_016239.3

c.[419delA];[9938A>C]

Sporadic

F

Severe/profound

Gently sloping/gently sloping

1479

MYO15A

DFNB3

NM_016239.3

c.[8450G>C];[9690+1G>A]

Sporadic

M

Moderate

Flat

1688

MYO15A

DFNB3

NM_016239.3

c.[1185dupC];[8969delG]

Sporadic

F

Severe/severe

Sloping/sloping

1644

CDH23

DFNB12/USH1D

NM_022124.5

c.[719C>T];[805C>T]

Sporadic

M

Profound/profound†

Steep sloping/sloping†

1528

CDH23

DFNB12/USH1D

NM_022124.5

c.[719C>T];[7802T>C]

AR

M

Severe/severe

Steep sloping/steep sloping

1397

PDZD7

DFNB57

NM_001195263.1

c.[490C>T];[503G>C]

AR

F

Moderate/moderate

Sloping/sloping

1597

PDZD7

DFNB57

NM_001195263.1

c.[490C>T];[494G>C]

AR

F

Moderate/moderate

Sloping/gently sloping

1648

OTOF

DFNB9

NM_001287489.1

c.[5816G>A];[5816G>A]

Sporadic

F

Severe

Flat

739

OTOG

DFNB18B

NM_001277269.1

c.[2116+2_2116+12del11];[5425C>T]

Sporadic

M

Moderate/moderate†

Flat/flat†

1631

PTPN11

NS1

NM_002834.3

c.[836A>G];[=]

Sporadic

M

Severe/severe†

Flat/flat†

1543

PTPN11

NS1

NM_002834.3

c.[1529A>G];[=]

Sporadic

F

Severe/profound†

Flat/steep sloping†

1583

SOX10

WS2E/4C/PCWH

NM_006941.3

c.[570C>A];[=]

Sporadic

F

Severe/severe

Gently sloping/gently sloping

1651

SOX10

WS2E/4C/PCWH

NM_006941.3

c.[1122delC];[=]

Sporadic

M

Severe/profound

Flat/gently sloping

1636

EYA1

BOS1/BOR

NM_000503.5

c.[1082G>A];[=]

AD

M

Profound/profound†

Flat/flat†

1456

ZNF335

PMCH10

NM_022095.3

c.[1399T>C];[1505A>G]

Sporadic

F

Severe

Flat

1410

STRC

DFNB16

NM_153700.2

c.[(?_ -1)_(*1_?)del];[(?_-1)_(*1_?)del]

AR

M

Profound/severe

Flat/flat

1564

STRC

DFNB16

NM_153700.2

c.[(?_-1)_(*1_?)del];[(?_-1)_(*1_?)del]

Sporadic

F

Mild/moderate

Sloping/sloping

1700

STRC

DFNB16

NM_153700.2

c.[(?_-1)_(*1_?)del];[(?_-1)_(*1_?)del]

Sporadic

M

Moderate/moderate

Flat/flat

1436

STRC

DFNB16

NM_153700.2

c.[(?_-1)_(*1_?)del];[(?_-1)_(*1_?)del]

Sporadic

F

Moderate

Flat to gently sloping

1633 (I-2)

STRC

DFNB16

NM_153700.2

c.[(?_-1)_(*1_?)del];[(?_-1)_(*1_?)del]

AD‡

F

Moderate/moderate

Gently sloping/gently sloping

1633 (II-1)

MYO6

DFNA22

NM_004999.3

c.[1325G>A];[=]

AD‡

M

Moderate/moderate

2k dip/U-shape

Family ID

Onset age of hearing loss (y)

Fluctuation

Progression

Tinnitus

Vestibular defect

Inner ear morphology (CT or MRI)

Additional phenotypes

1470

0

No

No

Unknown

No

Normal

 

1540

0

No

No

Unknown

No

Normal

 

1479

0

No

Yes

Unknown

Unknown

Normal

 

1688

< 4

No

Yes

Unknown

Unknown

Normal

 

1644

0

No

No

No

No

Normal

Motor develomental delay

1528

0

No

Unknown

No

No

Normal

 

1397

0

No

No

Unknown

Unknown

Normal

The sibling of proband shows moderate to severe hearing loss

1597

0

No

No

Unknown

No

Normal

The sibling of proband shows congenital, moderate hearing loss with high frequency–sloping type of audiograms

1648

0

No

No

No

No

Normal

Otoacoustic emission not tested

739

0

No

No

Unknown

No

Normal

 

1631

0

No

No

No

No

Normal

Short statue with subtle ocular hypertelorism, café au-lait pigmentation. Intellectual development not evaluated

1543

0

Unknown

No

Unknown

Unknown

Normal

 

1583

0

No

No

Unknown

Yes

Enlarged inner ear canals, Insufficient cochlear turn, hypoplasia of bilateral semicircular canals

Mixed hearing loss and vertigo

1651

0

No

Yes

Unknown

Yes

Normal

Ptosis on right eye, brown eyes, motor development delay. Normal digestive tract

1636

0

No

Yes

No

No

Not tested

Amblyopia with refractive errors, occasional cloudy urine. The father showed mild, low-frequency bilateral hearing loss. No branchial abnormalities

1456

0

Unknown

Unknown

Unknown

Unknown

Brain hypoplasia

Epilepsy, brain hypoplasia, hypertonia, convulsion, poor weight gain, motor develomental delay

1410

9

Yes

Yes

No

No

Normal

Spiral-shaped field, progressive vision loss, hyperactivity. The sibling (III-2) exhibited progressive hearing loss with vision loss

1564

0

No

No

No

No

Normal

 

1700

0

No

No

No

Yes

Normal

 

1436

0

No

No

Unknown

Unknown

Not tested

Short statue

1633 (I-2)

0

Unknown

Unknown

Unknown

Unknown

Not tested

 

1633 (II-1)

0

No

No

No

No

Normal

 
  1. †Based on ASSR
  2. ‡Family 1633 was initially considered to be in autosomal dominant inheritance mode; the mother and the proband was found to have distinct candidate genes responsible for hearing loss