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Table 2 Exonic nonsynonymous variants identified by NGS target sequecing

From: A complex pheotype in a girl with a novel heterozygous missense variant (p.Ile56Phe) of the GNAS gene

Chr

Start

End

Ref

Alt

dbSNP

Otherinfo

Func.refgene

Gene.refgene

ExonicFunc.refgene

AAChange.refgene

1000G_ALL

1000G_AFR

1000G_AMR

1000G_EAS

1000G_EUR

1000G_SAS

In silico/db prediction

chr12

20522252

20522252

G

A

rs12305038

 

exonic

PDE3A

nonsyn SNV

PDE3A:NM_000921:

exon1:c.G34A:p.D12N

0.33

0.51

0.22

0.31

0.31

0.24

Benign

chr20

57244396

57244396

G

A

rs41276950

 

exonic

STX16

nonsyn SNV

STX16:NM_001134772:

exon4:c.G431A:p.R144Q

NM_003763:

exon4:c.G380A:p.R127Q

0.014

0.0023

0.016

 

0.054

0.0041

Benign

chr20

57470693

57470693

A

T

 

het

exonic

GNAS

nonsyn SNV

GNAS:NM_001077488:

exon2:c.A166T:p.I56F

      

Novel:pathogenetic