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Table 1 HSD3B7 variants in 39 patients with 3β-hydroxy-Δ5-C27-steroid oxidoreductase (HSD3B7) deficiency

From: Genetic spectrum and clinical characteristics of 3β-hydroxy-Δ5-C27-steroid oxidoreductase (HSD3B7) deficiency in China

Patients

Zygosity

Location

Nucleotide change

(NM_025193.4)

Predicted amino acid change

(NP_079469.2)

ACMG classification

Parental derivation

Geographical origin

Classification

Evidence

P1

Hom

Ex6

c.1031 A > G

p.Tyr344Cys

LP

PS3 + PM2_S + PP4

Paternal/maternal

Zhejiang

P2

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

Maternal

Jiangxi

 

Het

Ex6

c.988_990delACC

p.Thr329del

LP

PM2_S + PM3 + PM4 + PP3

Paternal

Jiangxi

P3

Hom

Ex6

c.968 C > T

p.Thr323Met

VUS

PM2_S + PP3

Paternal/maternal

Jiangsu

P4

Het

Ex5

c.683G > A

p.Arg228Gln

LP

PS4 + PM2_S + PM3 + PP3

Paternal

Shandong

 

Het

Ex6

c.1040delT

p.Leu347Argfs*70

LP

PVS1 + PM2-S

Maternal

Shandong

P5

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

Maternal

Yunnan

 

Het

Ex2

c.262G > C

p.Gly88Arg

VUS

PM2_S + PM3 + PP3

Paternal

Yunnan

P6

Hom

Ex4

c.484_485delinsCC

p.Ser162Pro

VUS

PM2_S + PM5 + PP3

Paternal/maternal

Jiangsu

P7

Hom

Ex5

c.544delC

p.Leu182Cysfs*4

LP

PVS1 + PM2_S

Paternal/maternal

Guizhou

P8

Hom

Ex4

c.474delC

p.Tyr159Ilefs*27

LP

PVS1 + PM2_S

Paternal/maternal

Jiangxi

P9

Het

Ex5

c.543dupG

p.Leu182Alafs*16

P

PVS1 + PS4_M + PM2_S + PM3

Maternal

Hebei

 

Het

Ex6

c.790 C > A

p.Pro264Thr

VUS

PM2-S + PM3 + PP3

Paternal

Hebei

P10

Het

Ex6

c.781G > A

p.Asp261Asn

VUS

PM2_S + PM3 + PP3 + PP4

NA

Jiangxi

 

Het

Ex6

c.1079G > A

p.Trp360Ter

LP

PVS1-Strong + PM2_S + PP4

NA

Jiangxi

P11

Het

Ex3

c.401G > A

p.Gly134Glu

VUS

PM2_S + PP3 + PP4

NA

Anhui

 

Het

In4

c.532-3 C > G

 

VUS

PM2_S + PP4

NA

Anhui

P12

Het

Ex5

c.682 C > T

p.Arg228Trp

VUS

PM2-S + PM5 + PP3 + PP4

NA

Hebei

 

Het

Ex6

c.1061G > C

p.Arg354Pro

VUS

PM2_S + PP3 + PP4

NA

Hebei

P13

Het

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Maternal

Hubei

 

Het

Ex5

c.683G > A

p.Arg228Gln

LP

PS4 + PM2_S + PM3 + PP3

Paternal

Hubei

P14

Het

Ex1

c.147G > A

p.Trp49Ter

LP

PVS1 + PM2_S

NA

Sichuan

 

Het

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

NA

Sichuan

P15

Het

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Paternal

Xinjiang

 

Het

Ex5

c.569G > A

p.Arg190His

VUS

PM2_S + PM3 + PP3 + PP4

Maternal

Xinjiang

P16

Hom

Ex5

c.682 C > T

p.Arg228Trp

VUS

PM2-S + PM5 + PP3 + PP4

Paternal/maternal

Jilin/Shandong

P17

Hom

Ex6

c.988_990delACC

p.Thr329del

LP

PM2_S + PM3 + PM4 + PP3

Paternal/maternal

Henan

P18

Het

Ex5

c.543dupG

p.Leu182Alafs*16

P

PVS1 + PS4_M + PM2_S + PM3

Maternal

Gansu

 

Het

Ex5

c.683G > A

p.Arg228Gln

LP

PS4 + PM2_S + PM3 + PP3

Paternal

Gansu

P19

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

NA

Sandong

 

Het

Ex6

c.770 A > G

p.Tyr257Cys

VUS

PM2_S + PP3

NA

Sandong

P20

Het

Ex5

c.683G > A

p.Arg228Gln

LP

PS4 + PM2_S + PP3

NA

Guangxi

 

Het

Ex5

c.683G > T

p.Arg228Leu

VUS

PM2_S + PM5 + PP3

NA

Guangxi

P21

Het

Ex5

c.561T > G

p.Cys187Trp

VUS

PM2_S + PP3 + PP4

NA

Hunan

 

Het

Ex5

c.586G > A

p.Gly196Ser

VUS

PM2_S + PP3 + PP4

NA

Hunan

P22

Het

Ex3

c.346T > C

p.Cys116Arg

VUS

PM2-S + PM3 + PP3 + PP4

Paternal

Henan

 

Het

Ex6

C.964_965dup

p.Leu324Argfs*94

LP

PVS1 + PM2_S + PP4

Maternal

Henan

P23

Hom

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Paternal/maternal

Sandong

P24

Het

Ex5

c.676 C > T

p.His226Tyr

VUS

PM2-S + PM3 + PP3 + PP4

Maternal

Shandong

 

Het

 

c.-205_323-108del

 

P

PVS1 + PM2-S + PP4

Paternal

Shandong

P25

Het

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Maternal

Hubei

 

Het

Ex6

c.743G > C

p.Arg248Pro

LP

PM2-S + PM3 + PM6 + PP4

Assumed de novo

Hubei

P26

Hom

In3

c.431 + 2dupT

 

LP

PVS1 + PM2-S

Paternal/maternal

Yunnan

P27

Hom

Ex4

c.485_487delGCA

p.Ser162del

VUS

PM2-S + PM4 + PP4

Paternal/maternal

Zhejiang

P28

Het

Ex5

c.683G > A

p.Arg228Gln

LP

PS4 + PM2_S + PP3

Paternal

Hunan

 

Het

In5

c.694 + 2T > C

 

LP

PVS1 + PM2_S + PM3

Maternal

Hunan

P29

Het

Ex2

c.173_174del

p.Val58Glufs*14

LP

PVS1 + PM2_S

Paternal

Shandong

 

Het

Ex3

c.371T > C

p.Leu124Pro

VUS

PM2-S + PM3 + PP3 + PP4

Maternal

Shandong

P30

Het

Ex5

c.557 C > T

p.Thr186Met

VUS

PM2-S + PP3

Maternal

Shandong

 

Het

Ex6

c.968 C > G

p.Thr323Arg

VUS

PM2-S + PP3

Paternal

Shandong

P31

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

Paternal

Henan

 

Het

Ex5

c.543dupG

p.Leu182Alafs*16

P

PVS1 + PS4_M + PM2_S + PM3

Maternal

Henan

P32

Hom

Ex4

c.499G > A

p.Glu167Lys

VUS

PM2-S + PP3

Paternal/maternal

Jiangxi

P33

Het

Ex6

c.698 A > G

p.Asn233Ser

VUS

PM2_S + PM3 + PP3

Paternal

Shandong

 

Het

Ex6

c.1033G > T

p.Glu345Ter

LP

PVS1 + PM2_S

Maternal

Shandong

P34

Het

Ex6

c.920_931delGGCTGCTGCGGC

p.Trp307_Pro311delinsSer

LP

PM2-S + PM3 + PM4 + PP4

NA

Shanxi

 

Het

Ex5

c.543dupG

p.Leu182Alafs*16

P

PVS1 + PS4_M + PM2_S + PM3

NA

Shanxi

P35

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

Paternal

Jiangsu

 

Het

Ex2

c.319 C > T

p.Gln107Ter

LP

PVS1 + PM2_S

Maternal

Jiangsu

P36

Het

Ex1

c.45_46delAG

p.Gly17Leufs*26

P

PVS1 + PS4 + PM2_S

Paternal

Hunan

 

Het

Ex6

c.905delA

p.Asn302Metfs*18

LP

PVS1 + PM2_S + PM3

Maternal

Hunan

P37

Het

Ex3

c.402_403insG

p.Pro135Alafs*2

LP

PVS1 + PM2_S + PM3

Maternal

Anhui

 

Het

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Paternal

Anhui

P38

Hom

Ex5

c.543dupG

p.Leu182Alafs*16

P

PVS1 + PS4_M + PM2_S + PM3

Paternal and maternal

Shanxi

P39

Hom

Ex4

c.503G > A

p.Trp168Ter

P

PVS1 + PS4 + PM2-S

Paternal and maternal

Yunnan

  1. Het heterozygous, Hom homozagous, Ex exon, In Intron, P pathogenic, LP likely pathogenic, VUS variant of uncertain significance; PVS, pathogenic very strong, PS pathogenic strong, PM pathogenic moderate, PP pathogenic supporting
  2. According to the American College of Medical Genetics and Genomics interpretation guidelines
  3. Without confirmation of paternity and maternity