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BACTERIAL INFECTIONS
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Anaplasmosis
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Anaplasma phagocytophilum
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Ehrlichiosis
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Ehrlichia spp.
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Endemic typhus, Murine typhus /flea-borne typhus
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Rickettsia typhi
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Epidemic typhus
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Rickettsia prowazekii
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Mediterranean spotted fever
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Rickettsia conorii
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Rickettsialpox
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Rickettsia akari
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Scrub typhus, Tsutsugamushi disease
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Orientia tsutsugamushi
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Rocky mountain spotted fever
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Rickettsia rickettsii
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African tick typhus
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Rickettsia africae
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Relapsing fever
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Borrelia recurrentis
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Lyme disease
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Borrelia burgdoferi
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Other rickettsiosis
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Rickettsia spp.
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Anthrax
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Bacillus anthracis
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Tetanus
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Clostridium tetani
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Trachoma
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Chlamydia trachomatis
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Chancroid
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Haemophilus ducreyi
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Granuloma inguinale- Donovanosis
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Klebsiella granulomatis
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Actinomycosis
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Actinomyces israelii
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Treponema infections Yaws
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Treponema pallidum pertenue
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Buruli ulcer
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Mycobacterium ulcerans
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Hansen’s disease / Leprosy
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Mycobacterium leprae
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Leptospirosis
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Leptospira interrogans
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Bartonellosis, Oroya fever, Carrion disease
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Bartonella bacilliformis
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Bartonellosis, Trenchs fever
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Bartonella quintana
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Brucellosis, Malta fever
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Brucella spp.
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Melioidosis
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Burkholderia pseudomallei
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Paratyphoid fever
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Salmonella enterica serotype Paratyphi
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Typhoid fever
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Salmonella enterica serotype Typhi
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Rheumatic fever
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Streptococcus pyogenes
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Q fever, Nine mile fever, Quadrilateral fever, Query fever
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Coxiella burnetii
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Secondary non-tropical sprue - Whipple disease
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Tropheryma whipplei
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Cholera
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Vibrio cholerae
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Botulism
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Clostridium botulinum
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Tropical pyomyositis---
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Tularemia
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Francisella tularensis
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Plague
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Yersinia pestis
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Diphtheria
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Corynebacterium diphtheriae
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FUNGAL INFECTIONS
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Chromomycosis/Chromoblastomycosis
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Fonsecaea pedrosoi, Phialophora verrucosa and Cladophialophora carrionii
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Madura foot /Eumycetoma
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Madurella mycetomatis
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Sporotrichosis
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Sporothrix schenckii
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Paracoccidioidomycosis
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Paracoccidioides brasiliensis
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Coccidioidomycosis, Desert fever, San Joaquin valley fever, California disease
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Coccidioides immitis
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Peniciliosis
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Penicillium marneffei
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Scedosporiosis
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Scedosporium spp.
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HELMINTH INFECTIONS
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Cystic echinococcosis, Echinococcosis
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Echinococcus granulosus
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Alveolar echinococcosis
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Echinococcus multilocularis
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Ancylostomiasis /Ankylostomiasis
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Ancylostoma duodenale /Necator americanus
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Angiostrongyliasis
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Angiostrongylus cantonensis
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Strongyloidiasis, Anguilluliasis
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Strongyloides stercoralis
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Anisakiasis
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Anisakis spp.
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Ascariasis
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Ascaris lumbricoides
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Bilharziasis, Schistosomiasis
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Schistosoma spp.
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Clonorchiasis
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Clonorchis sinensis
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Opisthorchiasis
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Opisthorchis viverrini
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Cutaneous larva migrans
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Ancylostoma spp.
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Cysticercosis
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Taenia solium
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Diphyllobothriasis
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Diphyllobothrium latum
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Dirofilariasis
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Dirofilaria immitis
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Distomatosis
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Other trematodes-Heterophyes heterophyes, Metagonimus spp.
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Dracunculiasis, Guinea Worm disease
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Dracunculus medinensis
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Fascioliasis
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Fasciola spp.
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Paragonimiasis
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Paragonimus spp.
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Gnathostomiasis
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Gnathostoma spp.
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Hymenolepiasis
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Hymenolepsis nana
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Loiasis
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Loa loa
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Lymphatic filariasis
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Wuchereria bancrofti / Brugia malayi
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Mansonelliasis
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Mansonella spp.
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Onchocerciasis
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Onchocerca volvulus
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Sparganosis
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Spirometra spp.
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Taeniasis
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Taenia spp.
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Trichinosis
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Trichinella spiralis
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Trichuriasis
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Trichuris trichiura
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PROTOZOAL INFECTIONS
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Acanthamoeba infection, Keratitis
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Acanthamoeba spp.
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African trypanosomiasis, Sleeping sickness
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Trypanosoma brucei
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Amebiasis
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Entamoeba histolytica
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Amebic meningoencephalitis
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Naegleria fowleri
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American trypanosomiasis, Chagas disease
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Trypanosoma cruzi
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Babesiosis
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Babesia spp.
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Cryptosporidiosis
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Cryptosporidium parvum
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Cyclosporiasis
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Cyclospora cayetanensis
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Isosporiasis
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Isospora belli
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Leishmaniasis
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Leishmania spp.
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Malaria
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Plasmodium spp.
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Sarcocystosis, Sarcosporidiosis
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Sarcocystis hominis
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VIRAL INFECTIONS
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Avian flu
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Avian influenza
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Brazilian haemorrhagic fever
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Sabia virus
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California encephalitis
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California encephalitis virus
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Chapare haemorrhagic fever
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Chapare virus
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Chikungunya
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Chikungunya virus
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Colorado tick-borne disease, Mountain fever, American mountain fever, Mountain tick fever-
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Colorado tick fever (CTF)
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Crimea-Congo haemorrhagic fever
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CCHF virus
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Dengue fever
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Dengue virus
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Ebola
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Ebola virus
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Hantavirosis, Haemorrhagic fever-renal syndrome
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Hantavirus
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Hepatitis D
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Hepatitis D virus
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Hepatitis E
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Hepatitis E virus
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Herpes B infection, B virus infection
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Herpesvirus simiae, monkey B virus
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Tropical spastic paraparesis
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Human T-lymphotropic virus 1 (HTLV-1)
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Japanese encephalitis
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Japanese encephalitis virus (JEV)
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Junin haemorrhagic fever, Argentine haemorrhagic fever
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Junin virus
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Kyasanur haemorrhagic fever, Kyasanur forest disease, Monkey fever, Monkey disease
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KFD virus (KFDV)
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La Crosse encephalitis
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La Crosse virus (LACV)
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Lassa haemorrhagic fever
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Lassa virus
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Lujo haemorrhagic fever, Zambian haemorrhagic fever
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Lujo virus
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Machupo haemorrhagic fever
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Machupo virus (MACV)
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Marburg haemorrhagic fever /Marburg virus disease
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Marburg virus
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Nipah encephalitis, Nipah fever /Nipah virus disease
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Nipah virus
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Omsk haemorrhagic fever
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Omsk haemorrhagic fever virus (OHFV)
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Poliomyelitis, Poliomyelitis in patients with immunodeficiency deemed at risk
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Poliovirus
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Rabies
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Rabies virus
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Rift valley fever
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Rift valley fever (RVF) virus
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Saint Louis encephalitis
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Saint Louis encephalitis (SLE) virus
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Tick-borne encephalitis
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Tick-borne encephalitis (TBE) virus
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Venezuelan haemorrhagic fever
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Guanarito virus
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Western equine encephalitis, Western equine encephalomyelitis
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Western equine encephalitis (WEE) virus
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West-Nile encephalitis, West-Nile fever
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West-Nile virus (WNV)
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Yellow fever
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Yellow fever virus
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Zika virus disease
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Zika virus
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Middle East respiratory syndrome coronavirus
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MERS-CoV
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OTHER CONDITIONS
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Tick paralysis
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Tick
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Cutaneous myiasis
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Dermatobia hominis, Cordylobia anthropophaga
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African iron overload
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Ciguatera fish poisoning
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Tropical calcific chronic pancreatitis
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Tropical pancreatitis
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Tropical pancreatic diabetes
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Tropical endomyocardial fibrosis (TEF)
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Acquired Creutzfeldt-Jakob disease
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prion disease
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Hyperreactive malarial splenomegaly
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Genital female mutilation
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Severe fever with thrombocytopenia syndrome
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INFECTIONS WITH PARTICULAR ASPECTS TO BE CONSIDERED
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Giardiasis
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Giardia duodenalis
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Shiga-like toxin-associated HUS
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E.coli (O157)
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Tuberculosis
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Mycobacterium tuberculosis
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