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Table 1 Familial and sporadic pediatric cataracts with likely causative variants

From: Clinical and genetic characteristics of Chinese patients with familial or sporadic pediatric cataract

Proband ID

Sex

Age of onset

Ocular phenotype

Extraocular features

Inheritance,before and after testing

Gene Refseq ID

Nucleotide change

Predicted amino acid change

Protein domain

SIFT/MutTaster/PolyPhen

MAF (ExAC, East Asian)

ACMG

Novel

F#1

F

1 year

Perinuclear cararact, microphthalmia

-

AD

CRYAA NM_000394.3

c.61C>T

p.(Arg21Trp)

Alpha-crystallin N-terminal

D, D, D

-

P

Ref [35]

F#2

M

Birth

Total cataract

-

AD

CRYBA1 NM_005208.4

c.552_557delinsGGAGG

p.(Cys185Glufs*33)

-

-

-

P

Yes

F#3

F

Birth

Total cataract, microphthalmia

-

AD

CRYBA4 NM_001886.2

c.277T>C

p.(Ser93Pro)

2nd Greek key

D, D, D

-

P

Yes

S#1

F

Birth

Total cataract, nystagmus

-

Sporadic->new AD

CRYBB1 NM_001887.3

c.508G>T

p.(Asp170Tyr)

3rd Greek key

D, D, D

-

P

Yes

F#4

M

5 years

Nuclear cataract

-

AD

CRYGC NM_020989.3

c.233C>T

p.(Ser78Phe)

2nd Greek key

D, D, D

-

LP

Yes

F#5

M

Birth

Unknown type

-

AD

CRYGD NM_006891.3

c.70C>A

p.(Pro24Thr)

1st Greek key

T, D, B

-

P

Ref [10, 11]

S#2

M

Birth

Unknown type

 

Sporadic->new AD

CRYGD NM_006891.3

c.134T>C

p.(Leu45Pro)

2nd Greek key

D, D, D

-

P

Ref [12]

F#6

F

Birth

Total cataract, strabismus, nystagmus

-

AD

CRYGD NM_006891.3

c.309dup

p.(Glu104Argfs*4)

-

-

-

P

Ref [36]

S#3

F

Birth

Total cataract, nystagmus

-

Sporadic->new AD

CRYGD NM_006891.3

c.418C>T

p.(Arg140*)

-

-

-

P

Ref [37]

F#7

F

2 months

Unknown type, nystagmus

-

AD

MIP NM_012064.3

c.494G>A

p.(Gly165Asp)

Aquaporin-like

D, D, D

-

P

Ref [17]

S#4

F

3 months

Total cataract, nystagmus

-

Sporadic->new AD

MIP NM_012064.3

c.530A>G

p.(Tyr177Cys)

Aquaporin-like

T, D, D

-

P

Ref [18]

F#8

F

Birth

Unknown type, nystagmus

-

AD

MIP NM_012064.3

c.612C>G

p.(Tyr204*)

-

-

-

P

Yes

S#5/F#9

M/F

3/5 months

Total cataract, nystagmus/Total cataract

-

Sporadic/AR->AR

GCNT2 NM_001491.2

c.1043G>A

p.(Gly348Glu)

Lumenal domain

D, D, D

0.00104

P

Ref [15]

c.1148G>A

p.(Arg383His)

Lumenal domain

D, D, B

0.0003467

P

 

S#6

M

5 months

Perinuclear cararact

-

Sporadic->AR

IARS2 NM_018060.3

c.607G>C

p.(Gly203Arg)

Aminoacyl-tRNA synthetase

D, D, D

 

LP

Yes

c.2575T>C

p.(Phe859Leu)

Anticodon-binding

T, D, D

0.002775

LP

 

F#10

M

6 months

Unknown type

-

AR

IARS2 NM_018060.3

c.2446C>T

p.(Arg816*)

-

-

0.0001156

P

Yes

c.2575T>C

p.(Phe859Leu)

Anticodon-binding

T, D, D

0.002775

LP

 

S#7

M

Birth

Unknown type, microphthalmia, microcornea, nystagmus

Long narrow face, small nose, mild anteverted pinnae, and dental anomalies

Sporadic->X-linked

NHS NM_001291868.1

c.2739del

p.(Phe913Leufs*9)

-

-

-

P

Yes

S#8

M

Birth

Total cataract, microphthalmia, microcornea, nystagmus

Large anteverted pinnae, mental retardation

Sporadic/new X-linked

NHS NM_001291868.1

c.3207_3208del

p.(Ala1070Phefs*16)

-

-

-

P

Yes

S#9

F

Birth

Total cataract, microphthalmia, microcornea

Hypodontia

Sporadic->new X-linked

BCOR NM_001123384.1

c.4706dup

p.(Gly1570Argfs*7)

-

-

-

P

No

F#11

F

Birth

Total cataract

-

AD

BFSP2 NM_003571.3

c.697_699del

p.(Glu233del)

Intermediate filament rod domain

-

-

p

Ref [13]

S#10

M

7 months

Unknown type

-

Sporadic->AR

FYCO1 NM_024513.3

c.808C>T

p.(Gln270*)

-

-

-

P

Yes

c.3587+1G>T

 

-

-

0.0002326

P

 

S#11

M

Birth

Posterior polar cataract

-

Sporadic->new AD

MAF NM_001031804.2

c.950A>G

p.(Glu317Gly)

b-Zipper

D, D, D

-

P

Yes

F#12

M

3 months

Unknown type, nystagmus

-

AR->AD

PAX6 NM_001310159.1

c.113G>A

p.(Arg38Gln)

Paired domain

D, -, D

-

P

Yes

  1. Abbreviations: Proband ID, F family, S sporadic case, Sex, F female, M male; D, damaging, T tolerated, B benign, ACMG American College of Medical Genetics and Genomics, P pathogenic, LP likely pathogenic, Ref Reference