Table 2 Expression of genes near the chromosome 14 and 18 breakpoints
Chromosome 18 | |||||||
|---|---|---|---|---|---|---|---|
Gene | Chromosome | UDP4637 FPKM | Control FPKM | log (UDP/Control) | p-value | q-value | Significant |
MBD2 | chr18 | 10.0 | 9.0 | −0.15 | 0.250 | 0.39 | no |
SNORA37 | chr18 | 0.0 | 0.0 | 0.00 | 1.000 | 1.00 | no |
POLI | chr18 | 3.7 | 2.7 | −0.47 | 0.001 | 0.00 | yes a |
STARD6 | chr18 | 0.0 | 0.0 | 0.00 | 1.000 | 1.00 | no |
C18orf54 | chr18 | 3.0 | 1.4 | −1.09 | 0.000 | 0.00 | yes a |
DYNAP | chr18 | 2.6 | 0.0 | N/A | 0.000 | 0.00 | yes a |
RAB27B | chr18 | 0.6 | 1.7 | 1.52 | 0.000 | 0.00 | yes a |
CCDC68 | chr18 | 0.3 | 1.1 | 2.02 | 0.000 | 0.00 | yes a |
TCF4 | chr18 | 17.6 | 21.5 | 0.29 | 0.026 | 0.06 | no |
LOC100505474 | chr18 | 0.0 | 0.0 | 0.00 | 1.000 | 1.00 | no |
TXNL1 | chr18 | 22.5 | 25.7 | 0.19 | 0.155 | 0.27 | no |
WDR7 | chr18 | 6.7 | 6.4 | −0.08 | 0.563 | 0.70 | no |
BOD1P | chr18 | 0.0 | 0.0 | inf | 1.000 | 1.00 | no |
Chromosome 14 | |||||||
Gene | Chromosome | UDP4637 FPKM | Control FPKM | log (UDP/Control) | p-value | q-value | Significant |
TEX21P | chr14 | 0.1 | 0.1 | −0.04 | 1.00 | 1.00 | no |
MTHFD1 | chr14 | 32.0 | 29.4 | −0.12 | 0.36 | 0.51 | no |
AKAP5 | chr14 | 0.1 | 0.5 | 2.15 | 0.00 | 0.00 | yes a |
ZBTB25 | chr14 | 2.4 | 2.5 | 0.08 | 0.66 | 0.78 | no |
ZBTB1 | chr14 | 13.2 | 14.6 | 0.15 | 0.28 | 0.42 | no |
HSPA2 | chr14 | 53.3 | 120.4 | 1.18 | 0.00 | 0.00 | yes |
PPP1R36 | chr14 | 0.3 | 0.3 | 0.16 | 0.71 | 0.81 | no |
PLEKHG3 | chr14 | 2.5 | 3.2 | 0.35 | 0.02 | 0.05 | yes a |
SPTB | chr14 | 0.0 | 0.1 | 0.74 | 1.00 | 1.00 | no |
CHURC1,CHURC1-FNTB,FNTB | chr14 | 20.3 | 20.4 | 0.01 | 0.97 | 0.98 | no |
GPX2 | chr14 | 0.0 | 0.0 | inf | 1.00 | 1.00 | no |
LOC100506321 | chr14 | 0.0 | 0.1 | 1.83 | 1.00 | 1.00 | no |
MAX | chr14 | 23.2 | 18.8 | −0.31 | 0.26 | 0.40 | no |
MIR4706 | chr14 | 0.0 | 0.0 | 0.00 | 1.00 | 1.00 | no |
RAB15 | chr14 | 3.4 | 2.3 | −0.54 | 0.23 | 0.37 | no |