Number in probands (in 346 allele) | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Types of variants | Location | Amino acid change | Nucleotide change | Genomic position(Chr10) | Domain | Evolutionary conservation* | Homozygote | Compound heterozygote | Heterozygote | Allele frequency in normal controls | Allele frequency in ESP6500 | dbSNP135 | PolyPhen2 score | PROVEAN score | Novel or Known | Reference |
Missense | Exon 7 | p.P240L | c.719C > T | 73330641 | EC3 | 11/11, 44/44, 40/40 | 4 | 7 | 6 | 0/192 | 0 | rs121908354 | 0.999 | −3.051 | Known | [12] |
Exon 11 | p.P346S | c.1036C > T | 73377052 | - | 12/12, 42/42, 41/41 | 0 | 1 | 0 | 0/192 | 0 | None | 0.989 | −5.768 | Known | [27] | |
Exon 16 | p.G539D | c.1616G > A | 73437314 | EC5 | 12/12, 43/43, 42/42 | 0 | 1 | 0 | 0/190 | 0 | None | 0.092 | −4.272 | Novel | ||
Exon 18 | p.D645G | c.1934A > G | 73442277 | EC6 | 12/12, 45/45, 42/42 | 0 | 1 | 0 | 0/192 | 0 | None | 1.000 | −5.596 | Novel | ||
Exon 25 | p.E956K | c.2866G > A | 73464800 | EC9 | 12/12, 45/45, 42/42 | 0 | 4 | 0 | 0/192 | 0 | None | 0.999 | −2.939 | Known | [14] | |
Exon 35 | p.R1417W | c.4249C > T | 73498294 | EC13 | 12/12, 32/44, 0/40 | 0 | 0 | 1 | 0/192 | 0 | None | 0.453 | −1.346 | Known | [12] | |
Exon 39 | p.D1626A | c.4877A > C | 73537468 | EC15 | 12/12, 45/45, 41/42 | 0 | 1 | 0 | 0/192 | 0 | None | 0.952 | −5.3 | Known | [14] | |
Exon 39 | p.Q1716P | c.5147A > C | 73538025 | EC16 | 12/12, 45/45, 40/41 | 0 | 2 | 0 | 0/192 | 0 | None | 0.972 | −2.68 | Known | [12] | |
Exon 46 | p.R2029W | c.6085C > T | 73550924 | EC19 | 12/12, 45/45, 39/40 | 0 | 2 | 2 | 0/192 | 0 | None | 0.999 | −4.659 | Known | [12] | |
Exon 52 | p.E2438K | c.7312G > A | 73559336 | EC23 | 12/12, 43/44, 15/41 | 0 | 2 | 0 | 0/192 | 0 | None | 0.314 | −0.383 | Known | [14] | |
Exon 53 | p.L2473P | c.7418 T > C | 73560448 | EC23 | 11/11, 45/45, 36/36 | 0 | 0 | 1 | 0/192 | 0 | None | 0.998 | −5.603 | Known | [12] | |
Exon 53 | p.R2489H | c.7466G > A | 73560496 | EC23 | 12/12, 45/45, 36/36 | 0 | 0 | 1 | 0/192 | 0 | rs141986620 | 0.459 | −1.219 | Known | [12] | |
Frameshift | Exon 48 | p.L2223Wfs | c.6667del C | 73553352 | - | - | 0 | 1 | 0 | 0/192 | 0 | None | - | - | Novel | |
Exon 63 | p.N3044Tfs | c.9129 del G | 73571123 | - | - | 0 | 1 | 0 | 0/190 | 0 | None | - | - | Novel | ||
Putative spice site | IVS11 | - | c.1135-1G > T | 73403617 | - | 12/12, 41/41, 4/4 | 0 | 0 | 1 | 0/192 | 0 | None | - | - | Novel | |
IVS48 | - | c.6712 + 1G > A | 73553398 | - | 712/12, 44/44, 41/41 | 0 | 1 | 0 | 0/192 | 0 | None | - | - | Known | [11] | |
Uncertain pathogenicity variants | ||||||||||||||||
Missense | Exon 13 | p.V424M | c.1270G > A | 73405717 | EC4 | 12/12, 44/45, 0/36 | 0 | 0 | 1 | 0/190 | 0 | rs2305207 | 0.557 | −0.572 | Novel | |
Exon 13 | p.D428N | c.1282G > A | 73405729 | EC4 | 12/12, 39/45, 0/36 | 0 | 0 | 4** | 0/190 | 0 | rs188376296 | 0.103 | −0.045 | Novel | ||
Exon 35 | p.I1406V | c.4216A > G | 73498261 | EC13 | 12/12, 43/44, 40/40. | 0 | 0 | 1 | 1/189 | 0 | rs192459984 | 0.029 | −0.304 | Novel | ||
Exon 38 | p.G1583S | c.4747G > A | 73501580 | EC15 | 12/12, 44/44, 41/43 | 0 | 0 | 1 | 0/192 | 0 | None | 1.000 | −4.967 | Novel | ||
Exon 40 | p.V1711I | c.5131G > A | 73538009 | EC16 | 12/12, 29/45, 11/41 | 0 | 0 | 1 | 1/192 | 1/12645 | rs181611778 | 0.998 | −0.599 | Known | [12] | |
Exon 42 | p.G1799W | c.5395G > T | 73544070 | EC17 | 11/11, 45/45, 42/43 | 0 | 0 | 1** | 0/192 | 0 | None | 0.998 | −6.237 | Novel | ||
Exon 44 | p.V1908I | c.5722G > A | 73545397 | EC9 | 11/12, 28/45, 33/41 | 0 | 0 | 1 | 0/192 | 0 | None | 0.005 | 0.125 | Known | [14] | |
Exon 48 | p.D2202E | c.6606C > A | 73553291 | EC21 | 12/12, 45/45, 41/42 | 0 | 0 | 1** | 0/190 | 0 | None | 1.000 | −3.068 | Known | [28] | |
Exon 48 | p.Q2227P | c.6680A > C | 73553365 | EC21 | 12/12, 44/44, 23/41 | 0 | 0 | 1 | 0/192 | 0 | None | 0.729 | −0.775 | Known | [29] | |
Exon 57 | p.D2717N | c.8149G > A | 73566009 | EC25 | 12/12, 45/45, 42/42 | 0 | 0 | 1** | 0/190 | 0 | None | 0.999 | −1.909 | Novel | ||
Exon 61 | p.G2912S | c.8734G > A | 73569588 | EC27 | 11/11, 45/45, 42/42 | 0 | 0 | 1 | 0/192 | 0 | None | 0.774 | −2.221 | Known | [14] | |
Exon 70 | p.V3343M | c.10027G > A | 73574997 | - | 12/12, 45/45, 16/37 | 0 | 0 | 1** | 0/188 | 0 | None | 0.670 | −0.427 | Novel | ||
Putative splice site | IVS2 | - | c.68-3C > T | 73206072 | - | 12/12, 40/44, 18/19 | 0 | 0 | 1 | 0/188 | 0 | rs142456469 | - | - | Novel | |
IVS7 | - | c.625-5C > T | 73330542 | - | 11/12, 41/44, 0/40 | 0 | 0 | 1 | 0/192 | 0 | None | - | - | Novel | ||
IVS52 | - | c.7362 + 10G > A | 73559396 | - | 12/12, 11/42, 5/20 | 0 | 0 | 1 | 0/192 | 0 | None | - | - | Novel |