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Table 2 Summary of the whole exome sequencing of CFTD-LVNC samples

From: Digenic mutational inheritance of the integrin alpha 7 and the myosin heavy chain 7B genes causes congenital myopathy with left ventricular non-compact cardiomyopathy

Data

V-1

V-4

V-1 + V-4

Mapped Reads

52,921,718 (89%)

42,081,251 (90%)

 

SNV

207.784

160,388

 

dbSNPs

140.798

110,677

 

coding variants

25.387

24,669

 

Non synonym. (NS)

13.480

13,089

 

Frame-Shift

196

182

 

NS after filter dbSNPs

3923

3784

 

NS after filter 6 exomes*

2983

2806

 

Dominant Model

  

93

Dominant Model + validation**

  

56

Dominant Model (deleterious)

  

1

Recessive Model homozygous

 

46

 

Recessive Model + validation

 

10

 

Recessive Model (deleterious)

 

1

 

Recessive Model heterozygous

 

50

 

Recessive Model + validation

 

5

 

Recessive Model (deleterious)

 

0

 
  1. SNV single nucleotide variation; *: non synonymous variants obtained after to filter with six in house genome; Dominant Model: number of gene in which at least one variant is shared between the two samples; Dominant Model + validation**: autosomal variants shared between the two samples and remaining after filtering with 1000 genome database and validated with direct sequencing; Dominant Model (deleterious): variants predicted as deleterious effect of the change with SIFT; Recessive Model: genes in which two alleles are mutated.