Table 1 ISH probes used in this study
From: A core microbiome associated with the peritoneal tumors of pseudomyxoma peritonei
Probe (Abbreviation) | Taxonomic depth | Sequence (5’-3’) | Target |
|---|---|---|---|
Actinobacteria (ACT) | Phylum | TATAGTTACCACCGCCGT | 23S rRNA |
Bacteroidetes (BAC) | Phylum | AGCTGCCTTCGCAATCGG | 16S rRNA |
Firmicutes (FIR) | Phylum | TGGAAGATTCCCTACTGC | 16S rRNA |
Betaproteobacteria (BET) | Class | CCCATTGTCCAAAATTCCCC | 16S rRNA |
Gammaproteobacteria (GAM) | Class | GCCTTCCCACATCGTTT | 16S rRNA |
Rhizobiales (RHI) | Order | TCGCTGCCCACTGTCACC | 16S rRNA |
Verrucomicrobiales (VER) | Order | GCTGCCACCCGTAGGTGT | 16S rRNA |
Pseudomonas (PSE) | Genus | TCTGGAAAGTTCTCAGCA | 16S rRNA |
Propionibacterium (PRO) | Genus | CACCCATCTCTGAGCACCCCG | 16S rRNA |
Streptococcus (STR) | Genus | CCACTCTCCCCTTCTGCAC | 16S rRNA |