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Table 1 Non-deletional mutations that cause α-thalassaemia

From: α-thalassaemia

Affected sequence

Affected gene *

Mutation(s)

HGVS

Synonym Hb- name

Distribution

Phenotype

mRNA processing

Cryptic splicing

α2

Cd22 C>T

c.69C>T p.Gly23Gly

 

Surinamese

α+

IVS(donor)

α2

IVS I(-5 nt)

c.95+2_95+6delTGAGG

 

Mediterranean

α+

 

α1

IVS I-1(g>a)

c.95+1G>A

 

Thai

α+

 

α2

IVS II-2 (t>a)

c.300+2T>A

 

North-European

α+ - α0

IVS(acceptor)

α2

IVS I-116 (a>g)

c.96-2A>G

 

Dutch

α+

 

α1

IVS I-117 (g>a)

c.96-1G>A

 

Asian Indian

α+

 

α2

IVS II-142 (g>a)

c.301-1G>A

 

Argentinian

α+ - α0

 

α1

IVS II-148 (a>g)

c.301-2A>G

 

Iranian

α+

Poly A signal

α2

PA del 16 bp

c.*74_*89delCCTTCCTGGTCTTTGA

 

Arab

α+ - α0

 

α2

PA1 (AATAAG)

c.*94A>G

 

Middle East, Med

α+ - α0

 

α2

PA2 (AATGAA)

c.*92A>G

 

Med, Chinese

α+ - α0

 

α2

PA3 (AATA- -)

c.*93_*94delAA

 

Asian Indian

α+ - α0

 

α2

PA4 (AATAAC)

c.*94A>C

  

α+ - α0

mRNA translation

Initiation codon

- α3.7

init ATG>GTG

c.1A>G p.Met1Val

 

African

α0

 

- α3.7 II

init (-2 bp)

c.-2_-3delAC

 

N-African, Med

α+ - α0

 

α2

init ATG>ACG

c.2T>C p.Met1Thr

 

Med

α+

 

α2

init ATG>A-G

c.2delT p.Met1fs

 

Vietnam

α+

 

α1

init ATG>GTG

c.1A>G p.Met1Val

 

Med

α+

 

α2

init ATG>-TG

c.1delA p.Met1fs

 

South-East Asian

α+

Exon I

α1

Cd14 G>A

c.44G>A p.Trp15X

 

Iranian

α0

 

α2

Cd19 (-G)

c.60delG p.His21fs

 

Iranian

α+

 

α2

Cd22 (-C)

c.69delC p.Gly23fs

 

African

 
 

α2

Cd23 (G>T)

c.70G>T p.Glu24X

 

Tunesian

α0

 

- α

Cd30/31(-2 bp)

c.94_95delAG

 

African

α0

Exon II

α2

Cd39/41(del/ins)

c.118_126delACCAAGACC dup TACTTCCC p.Thr40fs

 

Yemenite-Jewish

α+

 

α1

Cd51-55(-13 bp)

c.155_167delGCTCTGCCCAGGT p.Gly52fs

 

Spanish

α+

 

α1

Cd62(-G)

c.187delG p.Val63fs

 

African

 
 

α1

Cd78(-C)

c.237delC p.Asn79fs

 

Black/Chinese

 
 

α2

Cd90 A>T

c.271A>T p.Lys91X

 

Middle Eastern

α+

Exon III

α1

Cd108(-C)

c.326delC p.Thr109fs

 

Jewish

α+ - α0

 

α2

Cd113/114(-C)

c.342_343delC p.Leu114fs

 

Unknown

 
 

α2

Cd113-116(-12 bp)

c.[339C>G;340_351delCTCCCCGCCGAG]

Leida

Spanish

α+ - α0

 

α2

Cd116 G>T

c.349G>T p.Glu117X

 

African

α+

 

α1

Cd131(+T)

c.396_397insT

Pak Num Po

Thai

α0

Termination codon

α2

Term Cd TAA>CAA

c.427T>C p.X143Gln

Constant Spring

South-East Asian

α+

 

α2

Term Cd TAA>AAA

c.427T>A p.X143Lys

Icaria

Med

α+

 

α2

Term Cd TAA>TCA

c.428A>C p.X143Ser

Koya Dora

Indian

α+

 

α2

Term Cd TAA>GAA

c.427T>G p.X143Glu

Seal Rock

African

α+

 

α2

Term Cd TAA>TAT

c.429A>T p.X143Leu

Paksé

Laotian, Thai

α+

Post translational

Exon I

- α

Cd14 T>G

c.43T>G p.Trp15Gly

Evanston

African

α+

 

α2

Cd21 G>T

c.64G>T p.Ala22Ser

Zoetermeer

Dutch

α+

 

α2

Cd21 G>C

c.64G>C p.Ala22Pro

Fontaine-bleau

French

α+

 

α2

Cd29 T>C

c.89T>C p.Leu30Pro

Agrinio

Med

α+

 

α2

Cd30(-3 bp)

c.91_93delGAG p.Glu31del

 

Chinese

α+ - α0

 

α2

Cd31 G>A

c.95G>A

 

Chinese

α+ - α0

Exon II

α2

Cd32 G>A

c.99G>A p.Met33Ile

Amsterdam

Surinamese black

α+ - α0

 

α2

Cd33 T>C

c.101T>C p.Phe34Ser

Chartres

French

α+

 

α2

Cd35 T>C

c.106T>C p.Ser36Pro

Evora

Filipino, Portugese

α+ - α0

 

α1

Cd37(-3 bp)

c.112_114delCCC

Heraklion

Greece

α+ - α0

 

α2

Cd59 G>A

c.179G>A p.Gly60Asp

Adana

Chinese

α+ - α0

 

α1

Cd60/61(-3 bp)

c.184_186delAAG

Clinic

Spanish

α+ - α0

 

α2

Cd62(-3 bp)

c.187_189delGTG

Aghia Sophia

Greek

α0

 

α1

Cd64-74(-33 bp)

c.196_228delGCGCTGACCAAGGCCGTGGCGCACGTGGAC

 

Greek

α0

 

α2

Cd66 T>C

c.200T>C p.Leu67Pro

Dartmouth

Caucasian

α+ - α0

 

α2

Cd93 T>G

c.281T>G p.Val94Gly

Bronte

Italian

α+

 

α1

Cd93-99(dup21 bp)

c.280_300dupGTGGACCCGGTCAACTTCAAG

 

Iranian

α+ - α0

Exon III

α2

Cd103 A>T

c.311A>T p.His104Leu

Bronovo

Turkish

α+

 

α2

Cd104 G>A

c.314G>A Cys105Tyr

Sallanches

French/Pakistani

α+

 

α1

Cd104 T>A

c.313T>A p.Cys105Ser

Oegstgeest

Surinamese

α+

 

α2

Cd108 C>A

c.326C>A p.Thr109Asn

Bleuland

Surinamese

α+

 

α2

Cd109 T>G

c.329T>G p.Leu110Arg

Suan Dok

Thai

α+

 

α

Cd110 C>A

c.332C>A Ala111Asp

Petah Tikva

Middle East

α+

 

α1

Cd119 C>T

c.358C>T p.Pro120Ser

Groene Hart or Bernalda

Moroccan

α+

 

α2

Cd125 T>G

c.377T>G p.Leu126Arg

Plasencia

Spanish

α+

 

α2

Cd125 T>C

c.377T>C p.Leu126Pro

Quong Sze

Chinese

α+

 

- α3.7

Cd125 T>A

c.377T>A p.Leu126Gln

Westeinde

Jewish

α0

 

α1

Cd129 T>C

c.389T>C p.Leu130Pro

Tunis-Bizerte

Tunisian

α+

 

α2

Cd129 T>C

c.389T>C p.Leu130Pro

Utrecht

Dutch

α+

 

α2

Cd130 G>C

c.391G>C p.Ala131Pro

Sun Prairie

Asian Indian

α+

 

α2

Cd131 T>C

c.394T>C p.Ser132Pro

Questembert

French/Yugoslavian

α+

 

α2

Cd132 T>G

c.398T>G p.Val133Gly

Caen

Caucasian

α+

 

α2

Cd136 T>C

c.410T>C p.Leu137Pro

Bibba

Caucasian

α+

  1. Del; deletion, Dup; duplication, ins; insertion, Cd; codon, PA; poly(A)signal, term; termination codon, init; initiation codon
  2. * The duplicated α-globin genes, α1 and α2 on the short arm of chromosome 16, are named HBA1 and HBA2 respectively according to the HUGO nomenclature. For practical reasons there will be referred to them as α-genes in the text.