From: Molecular and phenotypic characteristics of Bardet-Biedl syndrome in Chinese patients
Patient | Gene | Exon/Intron | Nucleotide change | Protein change | Hom/Het | gnomAD | Report | ACMG |
---|---|---|---|---|---|---|---|---|
F1 | BBS2 | Exon12 Intron4 | c.1438C > T c.534 + 1G > T | p.R480* | het | 0.000024 0.0001025 | Janssen et al. (2011) [26] Wang et al. (2013) [27] | P(PVS1,PS4,PM1,PM2) P(PVS1 + PM1 + PM2) |
F2 | BBS2 | Intron4 | c.534 + 1G > T |  | hom | 0.0001025 | Wang et al. (2013) [27] | P(PVS1 + PM1 + PM2) |
F3 | BBS2 | Exon10 | c.1148_1149dupTC | p.His384Serfs*34 | hom | - | Chen et al. (2017) [23] | P(PVS1 + PM2 + PP4) |
F4 | BBS2 | Exon5 Exon2 | c.563del c.235A > C | p.lle188Thrfs*13 p.Thr79Pro | het het | 0.0002 - | Xing et al. (2014) [28] Nykamp et al. (2017) [29] | P(PVS1,PS4,PM2) LP(PS4,PM2,PM3,PP4) |
F5 | BBS2 | Exon6 Exon6 | c.700C > T c.685 T > C | p.Arg234* p.Tyr229His | het het | 0.000027 0.000025 | Nishimura et al. (2001) [30] Gao et al. (2019) [31] | P(PVS1 + PM2 + PP4) LP PM2,PM3,PP3,PP4) |
F6 | BBS2 | Exon17 Exon1 | c.2107C > T c.79A > C | p.Arg703* p.Thr27Pro | het het | - - | Xu et al. (2015) [32] Meng et al. (2021) [33] | P(PVS1,PM2,PP4) LP(PS4PM2,PM3,PP4,PP3) |
F7 | BBS2 | Exon6 Exon2 | c.700C > T c.289C > T | p.Arg234* p.Gln97* | het het | 0.000027 - | Nishimura et al. (2001) [30] Wang et al. (2013) [27] | P(PVS1 + PM2 + PP4) P(PVS1 + PM2 + PP4) |
F8 | BBS2 | Exon9 Exon1 | c.943C > T c.79A > C | p.R315W p.T27P | het het | 0.000021 - | Katsanis et al. (2001) [34] Meng et al. (2021) [35] | LP(PS4PM1,PM2 + PP2 + PP3) LP(PS4PM2,PM3,PP4,PP3) |
F9 | BBS2 | Exon6 Intron4 | c.700C > T c.534 + 1G > T | p.Arg234* | het het | 0.000027 0.001025 | Nishimura et al. (2001) [30] Wang et al. (2013) [27] | P(PVS1 + PM2 + PP4) P(PVS1 + PM2 + PP4) |
F10 | BBS7 | Exon14 Exon8 | c.1395 T > A c.728G > A | p.Y465X p.C243Y | het het | - 0.00004 | Meng et al. (2021) [33] Shin et al. (2015) [36] | P(PVS1 + PM2 + PP4) LP(PS1,PM2,PM3,PP3) |
F11 | BBS9 | Exon6 Exon16 | c.460A > T c.1561C > T | p.lle154Phe p.Arg521Ter | het het | - - | Novel Novel | LP(PM2 + PM3,PP3,PP4) P(PVS1 + PM2 + PP4) |
F12 | BBS9 | Exon11 Exon17 | c.1215_1216del c.1789 + 1G > T | p.E408Rfs*1 | het het | - 0.00007957 | Novel Baralle et al. (2005) [37] | P(PVS1 + PM2 + PP4) P(PVS1,PM2,PM3,PP4) |
F13 | BBS10 | Exon1 Exon2 | c.145C > T c.1130G > A | p.Arg49Trp p.Arg377Lys | het het | - - | Stoetze et al. (2006) [38] Novel | P(PS3,PS4PM1,PM2,PP3,PP5) LP(PM2,PM3,PP3,PP4) |
F14 | BBS10 | Exon2 Exon2 | c.1391C > G c.2093 T > G | p.Ser464* p.Ile698Arg | het het | 0.000012 - | Scheidecker et al. (2015) [39] Novel | P(PVS1,PM1,PM2,) LP(PM2,PM3,PP3,PP4) |
F15 | BBS10 | Exon2 | c.445_446insC | p.L149Pfs*3 | hom | - | Lin et al. (2018) [24] | P(PVS1,PM2,PP4) |
F16 | BBS10 | Exon2 Exon2 | c.1514_1520del c.980C > T | p.Pro505fs p.G1y327Va1 | het het | - - | Novel Novel | P(PVS1,PM2,PP4) LP(PM2,PM3,PP3,PP4) |
F17-I | BBS12 | Exon2 Exon2 | c.1124_1125del c.1649 T > C | p.Ser375fs p.Leu550Pro | het het | - - | Novel Novel | LP(PVS1,PM2) LP(PM2,PM3,PP3) |
F17-II | BBS12 | Exon2 Exon2 | c.1124_1125del c.1649 T > C | p.Ser375fs p.Leu550Pro | het het | - - | Novel Novel | LP(PVS1,PM2) LP(PM2,PM3,PP3) |
F18-1 | BBS12 | Exon2 Exon2 | c.590_591del c.1320_1326dup | p.Tyr197fs p.GIn443fs | het het | 0.000008 - | Novel Dulfer et al. (2010) [40] | P(PVS1,,PM2,PM3,PP4) P(PVS1,PM2,PM3,PP4) |
F18-II | BBS12 | Exon2 Exon2 | c.590_591del c.1320_1326dup | p.Tyr197fs p.GIn443fs | het het | 0.000008 - | Novel Dulfer et al (2010) [40] | P(PVS1,,PM2,PM3,PP4) P(PVS1,PM2,PM3,PP4) |